A set of networks for studying the reconstruction of perturbation propagation paths.

The giant components of the networks studied are provided as the following edge list files:

airports_giant.net : AIRPORT NETWORK

ecoli_giant.net : E COLI NETWORK

email_giant.net : EMAIL NETWORK

internet_giant.net : INTERNET NETWORK

Hsapiens.net : H SAPIENS METABOLIC NETWORK

The format of the edge list files is:

n1 n2
n1 n3

where n1, n2 are node names.

Additionally, for the H sapiens case, we provide the experimentally observed nodes in the file

      Hsapiens_observation.dat

as a the 2-columns format

node state

where the first column reports the node name, and the second the observed state of such node (1 if perturbed, 0 if unperturbed)

  • Perturbation data: Network datasets for perturbation reconstruction | Download